papers

Publications
 

Smith, T. E., D. H. Wall, I. D. Hogg, B. J. Adams, U. N. Nielsen, and R. A. Virginia. 2012. Thawing permafrost alters nematode populations and soil habitat characteristics in an Antarctic polar desert ecosystem. Pedobiologia - International Journal of Soil Biology 55:75-81.

Nielsen, U. N., D. H. Wall, B. J. Adams, R. A. Virginia, B. A. Ball, M. N. Gooseff, and D. M. McKnight. 2012. The ecology of pulse events: insights from an extreme climatic event in a polar desert ecosystem. Ecosphere 3:art17.a

Nielsen, U. N., D. H. Wall, B. J. Adams, and R. A. Virginia. 2011. Antarctic nematode communities: observed and predicted responses to climate change. Polar Biol. 34:1701-17

Adhikari, B. N., and B. J. Adams. 2011. Molecular analysis of desiccation survival in Antarctic nematodes. Pp. 205-232 in R. N. Perry, and D. A. Wharton, eds. Molecular and Physiological Basis of Nematode Survival. CABI International, Wallingford.

Nielsen, U. N., D. H. Wall, G. Li, M. Toro, B. J. Adams, and R. A. Virginia. 2011. Nematode communities of Byers Peninsula, Livingston Island, maritime Antarctica. Antarct. Sci. 23:349-357.

 

Chaston, J. M., A. R. Dillman, D. I. Shapiro-Ilan, A. L. Bilgrami, R. Gaugler, K. R. Hopper, and B. J. Adams. 2011. Outcrossing and crossbreeding recovers deteriorated traits in laboratory cultured Steinernema carpocapsae nematodes. Int. J. Parasit. 41:801-809.

Adhikari, B. N., C. M. Tomasel, G. Li, D. H. Wall, and B. J. Adams. 2010. The Antarctic Nematode Plectus murrayi: An Emerging Model to Study Multiple Stress Survival. Cold Spring Harb Protoc 2010:pdb.emo142-.

Adhikari, B. N., C. M. Tomasel, G. Li, D. H. Wall, and B. J. Adams. 2010. Culturing the Antarctic Nematode Plectus murrayi. Cold Spring Harb Protoc 2010:pdb.prot5522-.

Peat, S. M., R. H. ffrench-Constant, N. R. Waterfield, J. Marokhazi, A. Fodor, and B. J. Adams. 2010. A robust phylogenetic framework for the bacterial genus Photorhabdus and its use in studying the evolution and maintenance of bioluminescence: A case for 16S, gyrB, and glnA. Mol. Phylogenet. Evol. 57:728-740.

Demetras, N. J., I. D. Hogg, J. C. Banks, and B. J. Adams. 2010. Latitudinal distribution and mitochondrial DNA (COI) variability of Stereotydeus spp. (Acari: Prostigmata) in Victoria Land and the central Transantarctic Mountains. Antarct. Sci. 22:749-756.

Ayres, E., J. N. Nkem, D. H. Wall, B. J. Adams, J. E. Barrett, B. L. Simmons, R. A. Virginia, and A. G. Fountain. 2010. Experimentally increased snow accumulation alters soil moisture and animal community structure in a polar desert. Polar Biol. 33:897-907.

Adhikari, B. N., D. H. Wall, and B. J. Adams. 2010. Effect of slow desiccation and freezing on gene transcription and stress survival of an Antarctic nematode. J. Exp. Biol. 213:1803-1812.

Simmons, B. L., D. H. Wall, B. J. Adams, E. Ayres, J. E. Barrett, and R. A. Virginia. 2009. Long-term experimental warming reduces soil nematode populations in the McMurdo Dry Valleys, Antarctica. Soil Biol. Biochem. 41:2052-2060.

Simmons, B. L., D. H. Wall, B. J. Adams, E. Ayres, J. E. Barrett, and R. A. Virginia. 2009. Terrestrial mesofauna in above- and below-ground habitats: Taylor Valley, Antarctica. Polar Biol. 32:1549-1558.

Shapiro-Ilan, D. I., G. N. Mbata, K. B. Nguyen, S. M. Peat, D. Blackburn, and B. J. Adams. 2009. Characterization of biocontrol traits in the entomopathogenic nematode Heterorhabditis georgiana (Kesha strain), and phylogenetic analysis of the nematode's symbiotic bacteria. Biol. Control 51:377-387.

Johnson, J. B., S. M. Peat, and B. J. Adams. 2009. Where's the ecology in molecular ecology? Oikos 118:1601-1609.

Bai, X. D., B. J. Adams, T. A. Ciche, S. Clifton, R. Gaugler, S. A. Hogenhout, J. Spieth, P. W. Sternberg, R. K. Wilson, and P. S. Grewal. 2009. Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1. BMC Genomics 10.

Adhikari, B. N., D. H. Wall, and B. J. Adams. 2009. Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags. BMC Genomics 10.

Adhikari, B. N., C. Y. Lin, X. D. Bai, T. A. Ciche, P. S. Grewal, A. R. Dillman, J. M. Chaston, D. I. Shapiro-Ilan, A. L. Bilgrami, R. Gaugler, P. W. Sternberg, and B. J. Adams. 2009. Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora. BMC Genomics 10.

Ayres, E., J. N. Nkem, D. H. Wall, B. J. Adams, J. E. Barrett, E. J. Broos, A. N. Parsons, L. E. Powers, B. L. Simmons, and R. A. Virginia. 2008. Effects of Human Trampling on Populations of Soil Fauna in the McMurdo Dry Valleys, Antarctica. Conserv. Biol. 22:1544-1551.

Victoriano, P. F., J. C. Ortiz. E. Benavides, B. J. Adams and J. W. Sites. 2008. Comparative phylogeography of co-distributed species of Chilean Liolaemus (Squamata: Tropiduridae) from the central-southern Andean range. Molecular Ecology 17(10):2397-2416.

Barrett, J. E., R. A. Virginia, D. H. Wall, and B. J. Adams. 2008. Decline of a dominant invertebrate species contributes to altered carbon cycling in low diversity soil ecosystem. Global Change Biology 14:1-11.

Peat, S. M., and B. J. Adams. 2008. Natural selection on the luxA gene of bioluminescent bacteria. Symbiosis 46 (2).

Bliss, T., A. R. Dillman, R. Russell, M. Anderson, M. Jett, D. Yourick, and B. J. Adams. 2007. The exterminators: An inquiry-based experimental module using insect parasitic nematodes. The Science Teacher 74(4):34-40.

Bai, X., P. S. Grewal, S. A. Hogenhout, B. J. Adams, T. A. Ciche, R. Gaugler and P. W. Sternberg. 2007. Comparative analysis of Heterorhabditis bacteriophora expressed sequence tags (ESTs). Journal of Parasitology 93(6):1343-1349.

Ayres, A., D. H. Wall, B. J. Adams, J. E. Barrett and R. A Virginia. 2007. Unique Similarity of Faunal Communities across Aquatic–Terrestrial Interfaces in a Polar Desert Ecosystem. Ecosystems DOI: 10.1007/s10021-007-9035-x SpringerLink Date Tuesday, April 03, 2007

Carrasco-Ballesteros, S., P. Castillo, B. J. Adams, and E. Perez-Artes. 2007. Identification of Pratylenchus thornei, the cereal and legume root-lesion nematode, based on SCAR-PCR and satellite DNA. European Journal of Plant Pathology 118:115-125.

Adams, B. J., D. H. Wall, U. Gozel, A. R. Dilllman, J. M. Chaston, and I. D. Hogg. 2007. The southernmost worm, Scottnema lindsayae (Nematoda): diversity, dispersal and ecological stability. Polar Biology 30:809-815.

Gozel, U., B. J. Adams, K. B. Ngyuen, R. N. Inserra, R. M. Giblin-Davis, and L. W. Duncan. 2006. A phylogeny of Belonolaimus populations in Florida inferred from DNA sequences. Nematropica 36(2) 155-171.

Nadler, S. A., P. De Ley, M. Mundo-Ocampo, A. B. Smythe, S. P. Stock, D. Bumbarger, B. J. Adams, I. T. De Ley, O. Holovachov, and J. G. Baldwin. 2006. Phylogeny of Cephalobina (Nematoda): Molecular evidence for substantial phenotypic homoplasy and incongruence with traditional classifications. Molecular Phylogenetics and Evolution 40(3) 696-711.

Bilgrami, A. L., R. Gaugler, D. I. Shapiro-Ilan and B. J. Adams. 2006. Source of trait deterioration in entomopathogenic nematodes Heterorhabditis bacteriophora and Steinernema carpocapsae during in vivo culture. Nematology, 8(3), 397-409.

Barrett JE, Virginia RA, Wall DH, Cary SC, Adams BJ, Hacker AL, Aislabie JM. 2006. Co-variation in soil biodiversity and biogeochemistry in Northern and Southern Victoria Land, Antarctica. Antarctic Science 18(4), 535-548.

Tigano, M., B. J. Adams, S. Maimala, D. G. Boucias. 2006. Genetic diversity of Hirsutella thompsonii isolates from Thailand based on AFLP analysis and partial b-tubulin gene sequences. 2006. Genetics and Molecular Biology 29(4) 715-721.

Gozel, U., F. Lamberti, L. Duncan, A. Agostinelli, L. Rosso, K. Nguyen and B. J. Adams. 2006. Molecular and morphological consilience in the characterization and delimitation of five nematode species from Florida belonging to the Xiphinema americanum group. Journal of Nematology 8(4),521-532.

Hogg, I., C. Cary, T. O’Donnell, K. Newsham, B. Adams, J. Aislabie, P. Convey, F. Frati, M. Stevens and D. H. Wall. 2006. Biotic interactions in Antarctic terrestrial ecosystems: are they a factor? Soil Biology and Biochemistry 38:3035-3040.

Adams, B. J., R. D. Bardgett, E. Ayres, D. H.Wall, J. Aislabie, S. Bamforth, R. Bargagli, C. Cary, P. Cavacini, L. Connell, P. Convey, J. W. Fell, F. Frati, I. Hogg, K. Newsham, A. O’Donnell, N. Russell, R. Seppelt, and M. I. Stevens. 2006. Diversity and Distribution of Victoria Land Biota. Soil Biology & Biogeochemistry. 38:3003-3018.

Wall, D. H., B. J. Adams, J. E. Barrett and D. W. Hopkins. 2006. A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry 38:3001-3002.

Nguyen, K. B., D. I. Shapiro-Ilan, J. R. Fuxa, B. W. Wood, M. A. Bertolotti, and B. J. Adams. 2006. Taxonomic and Biological Analysis of Two Isolates of Steinernema rarum (Doucet, 1986) Mamiya, 1988 Found in the Southeastern USA. Journal of Nematology 38:28-40.

Pérez-Losada, M., R. G. Christensen, D. A. McClellan, B. J. Adams, R. P. Viscidi, J. C. Demma and K. A. Crandall. 2006. Phylogenetic codivergence of polyomaviruses and their hosts. Virology, 80:5663-5669.

Adams, B. J., A. Fodor, H. S. Koppenhöfer, E. Stackebrandt, S. P. Stock and M. G. Klein. 2006. Biodiversity and Systematics of Nematode-Bacterium Entomopathogens. Biological Control 37:32-49.

Nkem, J. N., D. H. Wall, R. A. Virginia, J. E. Barrett, E. J. Broos, D. L. Porazinska, and B. J. Adams. 2006. Wind dispersal of soil invertebrates in the McMurdo Dry Valleys, Antarctica. Polar Biology 29:346-352.

Tigano, M. S., R. M. D. G. Carneiro, A. Jeyaprakash, D. W. Dickson, and B. J. Adams. 2005. Phylogeny of Meloidogyne spp. based on 18S rDNA and the intergenic region of mitochondrial DNA sequences. Nematology 7(6), 851-862.

Nguyen, K. B., Tesfamariam, M., Gozel, U., Gaugler, R. and B. J. Adams. 2004. Steinernema yirgalemense n. sp. (Rhabditida: Steinernematidae) from Ethiopia. Nematology 6(6):839-856.

Baldwin, J., S. A. Nadler and B. J. Adams. 2004. Evolution of plant parasitism among nematodes. Annual Review of Phytophathology 42:83-106.

Rodrigues, J.C.V., C.C. Childers, M. Gallo-Meagher, R. Ochoa and B. J. Adams. 2004. Mitochondrial DNA and RAPD polymorphisms in the haploid mite Brevipalpus phoenicis (Acari: Tenuipalpidae). Experimental and Applied Acarology 34:275-290.

Nguyen, K. B., D. I. Shapiro-Ilan, R. J. Stuart, C. W. McCoy, R. R. James and B. J. Adams. 2004. Heterorhabditis mexicana n. sp. (Heterorhabditidae: Rhabditida) from Tamaulipas, Mexico. Nematology 6 (2) 231-244.

Zhang, Y., I. Calin-Jageman, J. R. Gurnon, B. J. Adams, A. W. Nicholson, and J. L. Van Etten. 2003. Characterization of a chlorella virus PBCV-1 encoded ribonuclease III. Virology 317, 73-83

Grewal, P. S., S. K. Grewal, L. Tan and B. J. Adams. 2003. Parasitism of Mollusks by Nematodes: Types of Associations and Evolutionary Trends. Journal of Nematology 35(2):146-156.

Nadler, SA, R. A. Carreno, B. J. Adams. H. Kinde, J. G. Baldwin, and M. Mundo-Ocampo. 2003. Molecular phylogenetics and diagnosis of soil and clinical isolates of Halicephalobus gingivalis (Nematoda: Cephalobina: Panagrolaimoidea), an opportunistic pathogen of horses. 2003. International Journal for Parasitology 33: 1115–1125.

Nguyen, K. B. and B. J. Adams. 2003. SEM and systematic studies of Steinernema abbasi Elawad et al., 1997, and S. riobrave Cabanillas et al., 1994 (Rhabditida: Steinernematidae). Zootaxa 179: 1-10.

Tartar, A., D. G. Boucias, J. J. Becnel and B. J. Adams. 2003. Comparison of plastid 16S rDNA (rrn16) genes from Helicosporidium spp.: evidence supporting the reclassification of Helicosporidia as green algae (Chlorophyta). International Journal of Systematic and Evolutionary Microbiology. 53:1719-1723.

Dickman, M. B., Y.-S. Ha, Z. Yang, B. Adams, and C. Huang. 2003. A protein kinase from Colletotrichum trifolii is induced by plant cutin and is required for appressorium formation. Molecular Plant-Microbe Interactions 16(3):411-421.

Shapiro-Ilan, D. I., W. A. Gardner, J. R. Fuxa, B W. Wood, K. B. Nguyen, B. J. Adams., R. A. Humber, and M. J. Hall. 2003. Survey of entomopathogenic nematodes and fungi endemic to pecan orchards of the Southeastern US and their virulence to the pecan weevil (Coleoptera: Curculionidae). Environmental Entomology 32(1):187-195.

Morehead, T., J. R Gurnon, B. J Adams., K. W. Nickerson, L. Fitzgerald,. and J. L. Van Etten. 2002. Ornithine decarboxylase encoded by chlorella virus PBCV-1. Virology 301:165-175.

Marti, O. G., Adams, B. J. and Sylvain, J-F . 2002. Speciation in the Acugutturidae. Nematology. 4(4):489-504.

Adams, B. J. 2002. Nematological Examination. In Standard methods for the examination of water and wastewater, 21st edition. , S. J. Posavec, (ed.). American Public Health Association Washington, DC, American Water Works Association, Water Environment Federation.

Adams, B. J. 2002. Benthic Meiofauna. In Standard methods for the examination of water and wastewater, 21st edition. , S. J. Posavec, (ed.). American Public Health Association Washington, DC, American Water Works Association, Water Environment Federation.

Tartar, A., Boucias, D., Adams, B. and Becnel, J. 2002. Phylogenetic analysis identifies the invertebrate pathogen Helicosporidium sp. as a green algae (Chlorophyta). International Journal of Systematic and Evolutionary Microbiology 52:273–279.

Nguyen, K. B., J. Maruniak and B. J. Adams. 2001. The diagnostic and phylogenetic utility of the rDNA internal transcribed spacer sequences of Steinernema. Journal of Nematology 33:73-82.

Adams, B. J. The species delimitation uncertainty principle. 2001. Journal of Nematology 33:153-160.

Zhang, Y., B. Adams, L. Sun, D. E. Burbank, and J. L. Van Etten. 2001. Intron conservation in the DNA polymerase gene encoded by chlorella viruses. Virology 285:313-321.

Sun, L, J. R. Gurnon, B. J. Adams, M. V. Graves and J. L. Van Etten. 2000. Characterization of a b-1,3-glucanase encoded by chlorella virus PBCV-1. Virology 276:27-36.

Pruess, K. P., B. J. Adams, T. J. Parsons, X. Zhu, and T. O. Powers. 2000. Phylogenetic relationships of black flies (Diptera: Simuliidae) inferred from the mitochondrial cytochrome oxidase II gene. Molecular Phylogenetics and Evolution 16:286-295.

Nadler S. A., B. J. Adams, E. T. Lyons, R. L. DeLong, and S. R. Melin. 2000. Molecular and morphometric evidence for separate species of Uncinaria (Nematoda: Ancylostomatidae) in California sea lions and northern fur seals: Hypothesis testing supplants verification. Journal of Parasitology 86:1099-1106.

Sun, L., Y. Li, A. K. McCullough, T. G. Wood, R. S. Lloyd, B. J. Adams, J. R. Gurnon, and J. L. Van Etten. 2000. Intron conservation in a UV-specific DNA repair gene encoded by chlorella viruses. Journal of Molecular Evolution 50:82-92.

Sun, L., B. Adams, J. R. Gurnon, Y. Ye, and J. L. Van Etten. 1999. Characterization of two chitinase genes and one chitosanase gene encoded by chlorella virus PBCV-1. Virology 264:376-587.

Buzas, Z., H. Pamjav, D. Triga, T. Vellai, B. Adams, A. Reid, A. Burnell, I. Glazer, M. Klein, A. Fodor, and A. Chrambach. 1999. Application of PHastSystem PAGE as a new tool for molecular identification of entomopathogenic steinernematid and heterorhabditid nematodes. Electrophoresis 20:1266-1273.

Adams, B. J. 1998. Species concepts and the evolutionary paradigm in modern nematology. Journal of Nematology 30:1-21.

Adams, B. J., A. M. Burnell, and T. O. Powers. 1998. A phylogenetic analysis of Heterorhabditis (Nemata: Rhabditidae) based on internal transcribed spacer 1 DNA sequence data. Journal of Nematology 30:22-39.

Powers, T. O., T. C. Todd, A. M. Burnell, P.C.B. Murray, C.C. Fleming, A. L. Szalanski, B. J. Adams, and T. S. Harris. 1998. The internal transcribed spacer region as a taxonomic marker for nematodes. Journal of Nematology 29:441-450.

Hall, J. S., B. J. Adams, T. J. Parsons, R. C. French, L. C. Lane, and S. G. Jensen. 1998. Molecular cloning, sequencing and phylogenetic relationships of a new potyvirus-sugarcane streak mosaic virus and a reevaluation of the classification of the Potyviridae. Molecular Phylogenetics and Evolution 10:323-332.

Taylor, D.B., A.L. Szalanski, B.J. Adams, and R.D. Peterson II. 1998. Susceptibility of house fly (Diptera: Muscidae) larvae to entomopathogenic nematodes (Rhabditida: Heterorhabditidae, Steinernematidae). Environmental Entomology 27:1514-1519.